■ Book Publications

1. Knowledge-Based Software Development for Real-Time Distributed Systems, (J. J.P. Tsai and T. Weigert), World Scientific Inc., New Jersey, December 1993.
2. Monitoring and Debugging Distributed Real-Time Systems, (J. J.P. Tsai and S. Yang), IEEE Computer Society Press, Washington D.C., November 1994.
3. Distributed Real-Time Systems, (J. J.P. Tsai, Y. Bi, S. Yang, and R. Smith),Wiley & Sons Inc., New York, 1996.
4. Hybrid Parallel Execution Model for Logic-Based Specification Languages, (J. J.P. Tsai and B. Li),World Scientific Pub. Inc., New Jersey, 2001.
5. Compositional Verification of Concurrent and Real-Time Systems, (E. Juan and J. J.P. Tsai), Springer/Kluwer, 2002.
6. Machine Learning Applications in Software Engineering, (D. Zhang and J. J.P. Tsai), World Scientific Inc., 2005.
7. Security Modeling and Analysis of Mobile Agent Systems, (L. Ma and J. J.P. Tsai), Imperial College Press, London, 2006.
8. Ubiquitous Intelligence and Computing, (J. Ma, H. Jin, L. T. Yang, and J. J.P. Tsai), Lecture Notes in Computer Science, Springer, New York, 2006.
9. Advances in Machine Learning Applications in Software Engineering, (D. Zhang and J. J.P. Tsai), IGI Publishing Inc., PA, 2007.
10. Sensor Networks, Ubiquitous and Trustworthy Computing, (M. Singhal, G. Serugendo, J. Tsai, W. Lee, K. Romer, and Y. Tseng), IEEE Computer Society Press, 2008.
11. Machine Learning in Cyber Trust: Security, Privacy, Reliability, (J. J.P. Tsai and P. S. Yu), Springer, New York, 2009.
12. Intrusion Detection: A Machine Learning Approach, (J. J.P. Tsai and Z. Yu), Imperial College Press, London, 2010.
13. Humanities in the Age of Innovation: 12 Approaches, (J. J.P. Tsai), Global Views-Commonwealth Publishing Group, Taiwan, 2016.
14. The World Views of Nobel Laureates. ( J. J.P. Tsai), Global Views-Commonwealth Publishing Group, Taiwan, 2017.
15. Computational Methods with Applications in Bioinformatics Analysis. (J. J.P. Tsai and K.L. Ng), Imperial College Press, 2017.
16. Application of Omics, AI and Blockchain in Bioinformatics Research. (J. J.P. Tsai and K.L. Ng), Imperial College Press, 2019.
17. Innovation and Sustainability: Asia University SDGs Stories in Wufeng. (J. J. P. Tsai and H.C. Ko), China Times Publishing Co, Taiwan, 2021.

1. ” A Model for Object Relational OLAP,“ (S. Ikeda, P. Sheu, and J. J.P. Tsai), International Journal of Artificial Intelligence Tools, Vol. 19, No. 5, pp. 551-595, Oct. 2010.
2. “ Special Issue on Selected Papers from the 9th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2009) PREFACE,” (J.J.P. Tsai, Phillip C. Y. Sheu, and Han C. W. Hsiao), International Journal on Artificial Intelligence Tools, Vol. 19 No.3 pp. 233-234, 2010.
3. “ A Collaborative Multimedia Annotation Tool for Enhancing Knowledge Sharing in CSCL,” (Stephen J. H. Yang, Jia Zhang, Addison Y. S. Su, Jeffrey J. P. Tsai), Interactive Learning Environments, Vol. 19 No.1 pp. 45-62, 2011.
4. “ Cumulative Spectral Repeat Finder (CSRF): A Spectral Approach for Identifying the Length of Repeats in DNA Sequences,” (R. M. Chen, M. T. Hou, N. W. Chang, Y. T. Chen, and Jeffrey J. P. Tsai), International Journal on Artificial Intelligence Tools, Vol. 20, No. 1, pp.179-194, Feb. 2011.
5. “ Overexpression of Thy1/CD90 in human hepatocellular carcinoma is associated with HBV infection and poor prognosis.” (J. W. Lu, J. G. Chang, K. T. Yeh, R. M. Chen, Jeffrey J. P. Tsai, and R. M. Hu), Acta Histochemica, Vol. 113, No. 8, pp. 833-838, Dec. 2011.
6. “ Induction of a Secretable Beta-Lactamase Requires a Long Lag Time in Xanthomonas Campestris pv. Campestris str. 17”(Tsuey-Ching Yang, Mei-Jung Tsai, Jeffrey J.P. Tsai, and Rouh-Mei Hu), Research in Microbiology, Vol. 162, No. 10, pp. 999-1005, Dec. 2011.
7. “ Increased Expression of PRL-1 Protein Correlates with Shortened Patient Survival in Human Hepatocellular Carcinoma.”(Jeng-Wei Lu, Jan-Gowth Chang, Kun-Tu Yeh, Rong-Ming Chen, Jeffrey J.P. Tsai, Wei-Wen Su, and Rouh-Mei Hu), Clin Transl Oncol, Vol.14 ,pp.287-293,2012.
8. “ Cefoxitin is Both an Inhibitor of Class A Beta-Lactamase of Xanthomonas Campestris pv. Campestris str. 17 and an Inducer of its Gene” (Yang Tsuey-Ching, David Hecht, Jeffrey J.P. Tsai, and Rouh-Mei Hu), Research in Microbiology, Vol. 163, No. 8, pp. 550-556, Sep. 2012.
9. “ Clinical Implications of Deregulated CDK4 and Cyclin D1 Expression in Patients with Human Hepatocellular Carcinoma” (J. W. Lu, J. G. Chang, K. T. Yeh, R. M. Chen, Jeffrey J. P. Tsai, Su, W. W., and R. M. Hu*), Med Oncol, Vol. 30, pp. 379, 2013.
10. “  AmpG is Required for the BlaXc Beta-Lactamase Expression in Xanthomonas Campestris pv. Campestris str.17” (Yang, Tsuey-Ching, Tzu-Fan Chen, Jeffrey J. P. Tsai, and Rouh-Mei Hu), FEMS Microbiol Lett Vol. 340, pp. 101–108, 2013.
11. “ Data Hiding in DNA for Authentication of Plant Variety Rights” (Wei-Liang Tai, Charles C.N. Wang, Phillip C.Y. Sheu, and Jeffrey J. P. Tsai), Journal of Electronic Science and Techology, Vol. 11, No. 1, pp.38-43, 2013.
12. “ Prediction of microRNA-Regulated Protein Interaction Pathways in Arabidopsis Using Machine Learning Algorithms ” (Nilubon Kurubanjerdjit, Chien-Hung Huang, Yuliang Lee, Jeffrey J.P Tsai, and Ka-Lok Ng), Computers in Biology and Medicine ,Vol. 43 pp. 1645-1652, 2013.
13. “ The Prediction of Protein-Protein Interaction of A. Thaliana and X. Campestris Pv. Campestris Based on Protein Domain and Interolog Approaches” (Nilubon Kurubanjerdjit, Jeffrey J.P Tsai, Chen-Yu Sheu, and Ka-Lok Ng), Plant Omics Journal Vol. 6, No. 6, pp. 388-398, 2013.
14. “ A Model Comparison Study of the Flowering Time Regulatory Network in Arabidopsis” (Charles C.N. Wang, Pei-Chun Chang, Ka-Lok Ng, Phillip C.Y. Sheu, and Jeffrey J.P. Tsai), BMC Systems Biology, Vol.8, No. 15, 2014.
15. “ A Computer-aided System for Discriminating Normal from Cancerous Regions in IHC Liver Cancer Tissue Images Using K-means Clustering” (R. M. Chen, Y. J. Wu, S. R. Jhuang, M. H. Hsieh, C. L. Kuo, Y. L. Ma, R. M. Hu, and Jeffrey J. P. Tsai), WSEAS Transactions on Biology and Biomedicine, Vol. 11, 29:34, 2014.
16. “ Disturbance of A. thaliana microRNA-regulated pathways by Xcc bacterial effector proteins,” (Nilubon Kurubanjerdjit, Jeffrey J.P Tsai, Chien-Hung Huang, and Ka-Lok Ng), Amino Acids, Vol. 46, No. 4, pp. 953-961, 2014.
17. “ The Role of A. thaliana MicroRNA-Regulated Protein-Protein Interaction Networks in Plant-Pathogen Interaction Study,” (Nilubon Kurubanjerdjit, Jin-Shuei Ciou, Ke-Rung Tzeng, Ching-Yi Chen, Jeffrey J.P Tsai, Chien-Hung Huang, and Ka-Lok Ng), IAENG International Journal of Computer Science, Vol.41, No. 2, pp. 141-147, 2014.
18. “ Cancer Rick in Patients Aged 30 Years and above with Type 2 Diabetes Receiving Antidiabetic Monotherapy: A Cohort Study Using Metformin as the Comparator” (Yu-Ching Chen, Victor C Kok, Ching-Hsuan Chien, Jorng-Tzong Horng, and Jeffrey J. P. Tsai), Therapeutics and Clinical Risk Management , Vol. 11, pp. 1315-1323, Aug. 2015.
19. “ FARE-CAFE: a Database of Functional and Regulatory Elements of Cancer-associated Fusion Events” (Parveen Kumar Korla, Jack Cheng, Chien-Hung Huang, Jeffrey J. P. Tsai, Yu-Hsuan Liu, Nilubon Kurubanjerdjit, Wen-Tsong Hsieh, Huey-Yi Chen, and Ka-Lak Ng), Batabase, Vol. 2015, Aug. 2015.
20. “ Using Time-course Data to Identify Stress- and LDL-induced MicroRNA Target Genes for Vascular Smooth Muscle Cells,” (Chien-Hung Huang, Jin-Shuei Ciou, Shun-Tsung Chen, Ke-Rung Tzeng, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, and Ka-Lok Ng), Engineering Letters, Vol. 23, No. 4, pp307-311, 2015.
21. “ Transcription Factor and MicroRNA-regulated Network Motifs for Cancer and Signal Transduction Networks,” (Wen-Tsong Hsieh, Ke-Rung Tzeng, Jin-Shuei Ciou, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit , Chien-Hung Huang, and Ka-Lok Ng), BMC Systems Biology (Suppl. 1), S5, Dec. 2015.
22. “ Towards Semantic Biomedical Problem Solving,” "(Charles C. N. Wang, Phillip C. Y. Shen, Hiroshi Yamaguchi, and Jeffrey J. P. Tsai), Semantic Computing, Vol. 9, No.4, 415-432, 2015.
23. “ KSOS-An Operating System for Knowledge Societies,” "(Ke Hao, Phillip C. Y. Shen and Jeffrey J. P. Tsai), Semantic Computing, Vol. 9, No.4, 483-502, 2015.
24. “ Finding a Potential Dipeptidyl Peptidase-4 (DPP-4) Inhibitor for Type-2 Diabetes Treatment Based on Molecular Docking, Pharmacophore Generation, and Molecular Dynamics Simulation,” "( Harika Meduru, Yeng-Tseng Wang, Jeffrey J. P. Tsai, and Yu-Ching Chen), International Journal of Molecular Sciences, Vol. 17, No.6, pp. 920 , Jun. 2016.
25. “ DNA Methylation-regulated MicroRNA Pathways in Ovarian Serous Cystadenocarcinoma: a Meta-analysis” (David Agustriawan, Chien-Hung Huang, Jim Jinn-Chyuan Sheu, Shan-Chih Lee, Jeffrey JP Tsai, Nilubon Kurubanjerdjit, and Ka-Lok Ng), Computational Biology and Chemistry, Vol. 65, pp.154-164, Dec. 2016.
26. “ Identify Potential Drugs for Cardiovascular Diseases Caused by Stress-induced Genes in Vascular Smooth Muscle Cells” (Chien-Hung Huang, Jin-Shuei Ciou, Shun-Tsung Chen, Victor C. Kok, Yi Chung, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Chi-Ying F. Huang, and Ka-Lok Ng), PeerJ, Vol. 4, No. e2478, 2016.
27. “ Trust-Based Task Assignment with Multi-Objective Optimization in Service-Oriented Ad Hoc Networks,” (Y. Wang, I.R. Chen, J.H. Cho, and J.J.P. Tsai), IEEE Transactions on Network and Service Management, Vol. 14,pp. 217-232, 2017.
28. “ A Survey of Trust Computation Models for Internet of Things Systems,” (J. Guo, I.R. Chen, and J.J.P. Tsai), Computer Communications, Vol. 97, pp. 1-14, 2017.
29. “ The Combination of Computational and Biosensing Technologies for Selecting Aptamer against Prostate Specific Antigen, (Pi-Chou Hsieh, Hui-Ting Lin, Wen-Yih Chen, Jeffrey J. P. Tsai, and Wen-Pin Hu), BioMed Research International, Vol. 2017, No. 3, pp. 1-11 2017.
30. “ Drug Repurposing and Therapeutic Anti-MicroRNA Predictions in Oxidized Low-Density Lipoprotein-Induced the Proliferation of Vascular Smooth Muscle Cell Associated Diseases ” (Shun-Tsung Chen, Chien-Hung Huang, Victor C. Kok, Jin-Shuei Ciou, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Chi-Ying F Huang, and Ka-Lok Ng), Bioinformatics and Computational Biology, Vol.15, No. 1, pp. 1-23, 2017.
31. “ Trust-based Mechanism Design for Cooperative Sepctrum Sensing in Cognitive Radio Networks,” (Ji Wang, Ing-Ray Chen, Jeffrey J.P. Tsai, and Ding-Chau Wang), Computer Communications, Vol. 116, pp. 90-100, 2018.
32. “CATrust: Context-Aware Trust Management for Service-Oriented Ad Hoc Networks, (Y. Wang, I.R. Chen, J.H. Cho, A. Swami, Y.C. Lu, C.T. Lu, and J.J.P. Tsai), IEEE Transactions on Services Computing, Vol. 11, Issue. 6, pp. 908-921, 2018.
33. “Trust-based Service Management for Mobile Cloud IoT Systems, (Ing-Ray Chen, Jia Guo, Ding-Chau Wang, Jeffrey J.P. Tsai, Hamid Al-Hamadi and Ilsun You), IEEE Transactions on Network and Service Management Vol.16, No. 1, pp. 246-263, March 2019. 
34. “ Trust-Based IoT Cloud Participatory Sensing of Air Quality,”(Jia Guo, Ing-Ray Chen, Ding-Chau Wang, Jeffrey J. P. Tsai, Hamid AI-Hamadi), Wireless Personal Communications.,Vol. 105, No. 4, pp. 1461-1474, Februay 2019.
35. “ Identification of Prognostic Candidate Genes in Breast Cancer by Integrated Bioinformatic Analysis.“(Wang, Charles C.N., Li, Chia Ying, Cai, Jia-Hua, Sheu, Phillip C.-Y., Tsai, Jeffrey J.P., Wu, Meng-Yu, Li, Chia-Jung and Hou, Ming-Feng), Journal of Clinical Medicine, Vol. 8, No. 8, pp.1160, June 2019.  
36. “ Usefulness of Therapeutic Hypothermia to Improve Survival in Out-of-Hospital Cardiac Arrest.“(Po-Yen Ko, Ling-Ling Wang, Yi-Jiun Chou, Jeffrey J. P. Tsai, Su-Hua Huang, Chih-Ping Chang, Yi-Tzon Shiao and Jen-Jyh Lin.), Acta Cardiologica Sinica, Vol. 35, No. 4, pp.394-401, July 2019.  
37. “ Robust and Computationally Efficient Digital IIR Filter Synthesis and Stability Analysis under Finite Precision Implementations“(Hsien-Ju Ko and Jeffrey J.P. Tsai), IEEE Transactions on Signal Processing, vol. 68,  pp. 1807-1822,  2020.  
38. “ Identification of Hub Genes Associated with Development of Head and Neck Squamous Cell Carcinoma by Integrated Bioinformatics Analysis” (Chia Ying Li, Jia-Hua Cai, Jeffrey J.P. Tsai, and Charles C.N. Wang), Frontiers in Oncology, Vol. 10, pp. 681, May 2020.
39. “ A Patient-Centric Health Information Exchange Framework Using Blockchain Technology” (Yan Zhuang, Lincoln R. Sheets, Yin-Wu Chen, Zon-Yin Shae, Jeffrey J.P. Tsai, and Chi-Ren Shyu), IEEE Journal of Biomedical and Health Informatics, Vol. 24, No. 8, pp. 2169-2176, August 2020.
40. “ Text Mining in literature review of urothelial cancer using topic model” (Hsuan-Jen Lin, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai, Che-Yi Chou, and Charles C.N. Wang), BMC Cancer, Vol. 20, pp. 462, May 2020..  
41. " Dissecting Molecular Network Structures using a Network Subgraph Approach,” (Chien-Hung Huang, Efendi Zaenudin, Jeffrey J.P. Tsai, Nilubun Kurubanjerdjit, Eskezeia Dessie, Ka-Lok Ng), PeerJ, Vol. 8, No. e9556, August 2020. 
42. " Identification of most influential co-occurring gene suites for gastrointestinal cancer using biomedical literature mining and graph-based influence maximization”(Charles C. N. Wang,Jennifer Jin,Jan-Gowth Chang,Masahiro Hayakawa,Atsushi Kitazawa,Jeffrey J. P. Tsai,Phillip C.-Y. Sheu), BMC Medical Informatics Decis. Mak.Vol. 20, pp. 208, September 2020.
43. " Construction and Validation of A Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using An Integrated Statistical and Bioinformatic Approach” (Eskezeia Yihunie Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J.P. Tsai, Ya-Sian Chang, Jan-Gowth Chang and Ka-Lok Ng), International Journal of Molecular Sciences(IJMS), Vol.22, No.4:1632, February 2021.
44. " A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients” (Eskezeia Y Dessie, Jeffrey J. P. Tsai, Jan-Gowth Chang, Ka-Lok Ng), BMC Bioinformatics, 2021.
45. " LASSO and bioinformatics analysis in the identification of key genes for Prognostic Genes of Gynecologic Cancer"(Shao-Hua Yu, Jia-Hua Cai, De-Lun Chen, Szu-Han Liao, Yi-Zhen Lin, Yu-Ting Chung, Jeffrey J. P. Tsai and Charles C. N. Wang),Journal of Personalized Medicine,11(11), 1177, November 2021.
46. " A Clinical Kidney Intelligence Platform Based on Big Data, Artificial Intelligence, and Blockchain Technology” (Zon-Yin Shae and Jeffrey J. P. Tsai) International Journal on Artificial Intelligence Tools, Vol. 31, No. 3 pp.2241007-2241012, 2022.
47. “ Network Subgraph-Based Approach for Analyzing and Comparing Molecular Networks.” (Chien-Hung Huang​, Efendi Zaenudin, Jeffrey J.P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng) PeerJ Vol.10:e13137, May 2022.
48. “ Enhanced Risk of Osteoporotic Fracture in Patients with Sarcopenia: A National Population-Based Study in Taiwan”(Han-Wei Zhang, Zhi-Ren Tsai, Ko-Ta Chen, Sheng-Lun Hsu, Yi-Jie Kuo, Ying-Chin Lin, Shu-Wei Huang, Yu-Pin Chen, Hsiao-Ching Peng, Jeffrey J.P. Tsai, and Chun-Yi Hsu.) Journal of Personalized Medicine.; Vol.12 No.5 pp.791-801, May 2022.
49. “Validation of gait measurements on short-distance walkways using Azure Kinect DK in patients receiving chronic hemodialysis”(Zhi-Ren Tsai, Chin-Chi Kuo, Cheng-Jui Wang, Jeffrey J.P. Tsai, Hsin-Hsu Chou) Journal of Personalized Medicine; Vol 13 (7) 1181, 24 Jul 2023
50. “Association between hyperlipidemia and trigger finger: A nationwide population-based cohort study” (Jeffrey J.P. Tsai, Pei-Tsen Chen, Han-Wei Zhang, Zhi-Ren Tsai, Hsiao-Ching,Peng , Yu-Shan Lin, Chao-Wen Lin) PLoS One ; Vol.18 (7) e0288426, July 10, 2023
51. “Performance Evaluation of Infinite Impulse Response Filter Synthesis Using Parallel-Direct-Ladder Form Under Finite Word-Length Effects.”(Ko, Hsien-Ju and Yang, Hao-Cheng and Tsai, Jeffrey J.P. and Yu, Wen-Shyong) Signal Processing. ;Vol.210, Sep.2023

■ Refereed Conference Publications

1. “ Object Relational Programming of Biomedical Images” (Han C.W. Hsiao, R. M. Hu, W. L. Tai, R. M. Chen, and Jeffrey J.P. Tsai), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
2. “ Ergonomic Designs Based on Musculoskeletal Models” (Chun-Ming Chang, and Jeffrey Tsai), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
3. “ Simulation of Bacterial Chemotaxis by the Random Run and Tumble Model” (Charles C.N. Wang, Ka-Lok Ng, Yu-Ching Chen, Phillip C.Y. Sheu, and Jeffrey J.P. Tsai), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
4. “ Molecular Modeling Studies of AmpR Mediated AmpC beta-Lactamase Repression” (David Hecht, Charles C.N. Wang, Rouh-Mei Hu, and Jeffrey J.P. Tsai), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
5. “ Investigating Cancer-related Proteins Specific Domain Interactions and Differential Protein Interactions Caused by Alternative Splicing” (Yu-Liang Lee, Jie-Wei Weng, Wen-Chin Chiang, Yi-Wen Lin, Ka-Lok Ng, Jeffrey Jing-Pha Tsai, and Chi-Ying Huang), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
6. “ The Application of Molecular Markers to Identify Edible Fungi - A Case Sudy of Tremella fuciformis” (Jing-Gung Chung, Jeffrey J.P. Tsai, Chien-Yih Lin, Yang-Chia Shih, Jin-Shih Chen, and Ming-Jen Fan), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
7. “ T Blood Cell Image Classification Based on Hierarchical SVM ” (Wei-Liang Tai, Rouh-Mei Hu, Han C.W. Hsiao, Rong-Ming Chen, and Jeffrey J. P. Tsai), Proceeding of IEEE International Symposium on Multimedia , Dec., 2011.
8. “ Towards Improving the Biological Relevance of Time-Series Gene Expression Clustering Using support Vector machine ” (Pei-Lin Chen, Rong-Ming Chen, Chien-Yuan Li, Rouh-Mei Hu, Been-Chian Chien, and Jeffrey Tsai), Proceedings of the 23rd International Conference on Genome Informatics , Dec. 12-14, 2012. (poster paper)
9. “ TTRSIS: A Cloud Computing Platform for Rice Functional Genomics Research through a Reverse Genetics Approach” (Ming-Jen Fan, Su-May Yu, Tzu-Chieh Hung, Wei-Quan Chen, Yue-Ie Hsing, Hsin-Li Lin, Chia-Cheng Liu, Jing-Gung Chung, Jeffrey J.P. Tsai), Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 24-26, 2011.
10. “ Molecular Simulation Methods for Selecting Thrombin-Binding Aptamers ” (Kumar Jangam Vikram, Wen-Yih Chen, Jeffrey J. P. Tsai and Wen-Pin Hu), Proceedings of the 10th FTRA International Conference on Secure and Trust Computing, data management, and Applications, July 8-10, 2013.
11. “ A Study of Floral Transition in Arabidopsis Using Partial Correlation Analysis”(Nikubon Kuruanjerdjit, Jeffrey J.P. Tsai ,Jin-Shuei Ciou , Ka-Lok Ng ), Proceedings of the 2013 International Conference on Bioinformatics & Computational Biology , July 22-25, 2013.
12. “ Compounds Screening from Traditional Chinese Herbs for Inhibition of In-stent Restenosis in Coronary Atherosclerosis”(Jia-Zhen Guo, Yo-Xiu Lin, Pei-Chun Chang, Chieh-Hsi Wu, Phillip C.Y. Sheu, Jeffrey J. P. Tsai), Proceedings of the 12th Asia Pacific Bioinformatics Conference , Jan 15-19, 2014.
13. " An Integrated Systems Biology Approach for Biological Systems" (Jeffrey J.P. Tsai), Proceedings of the 12th IEEE International Symposium on Autonomous Decentralized Systems , March 25-27, 2015.
14. " The 95% ethanolic extract from Typha angustifolia has an anti-smooth muscle cell proliferation and anti-inflammation effect" (Chun-Tzu Chen, Jeffrey J.P. Tsai, Tzu-Fan Chen, Hebron C. Chang, and Rouh-Mei Hu), Proceedings of the 19th International congress of cytology , May. 28-Jun. 01, 2016.
15. " National Representatively Healthcare database and the Application" (Yi Chung, Yu-Ching Chen, and Jeffrey J. P. Tsai), Proceedings of the Second IEEE International Conference on Multimedia Big Data, Apr. 20-22, 2016.
16. " Trust-based Cooperative Spectrum Sensing Against SSDF Attacks in Distributed Cognitive Radio Networks" (Ji Wang, Ing-Ray Chen, Jeffrey J.P. Tsai and Ding-Chau Wang), Proceedings of the 2016 IEEE Communications Society Communications Quality and Reliability Workshop, May 10 2016.
17. " A Deep Learning-Based Customer Forecasting Tool" (Kuo-Yi, Lin and Jeffrey J.P. Tsai), Proceedings of the Second IEEE International Conference on Multimedia Big Data, Apr. 20-22, 2016.
18. " A Hierarchical Cloud Architecture for Integrated Mobility, Service, and Trust Management of SOA-based Internet of Things" (Jian Guo, Ing-Ray Chen, Jeffrey J.P. Tsai and Hamid Al-Hamadi), Proceedings of the 6th IEEE International Conference on Innovative Computing Technology, Dublin, Ireland, Aug. 24-25, 2016.
19. " Mining Distinctive DNA Patterns from the Upstream of Human Coding&Non-Coding Genes via Class Frequency Distribution" (Jing-Doo Wang, Wen-Ling Chen, Charles C N Wang, Jan-Gowth Chamg and Jeffrey J.P. Tsai), Proceedings of the IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology, Oct. 5-7, 2016.
20. " Drug repurposing and therapeutic anti-microRNA predictions in oxidized low-density lipoprotein-induced the proliferation of vascular smooth muscle cell associated disease" (Ka-Lok Ng and Jeffrey J.P. Tsai), Proceedings of the 27th International Conference on Genome Informatics, Oct. 3-5, 2016.
21. " DNA Methylation-regulated microRNA Pathways in Ovarian Serous Cystadenocarcinoma: a Meta-analysis" (David Agustriawan, Ka-Lok Ng and Jeffrey J.P. Tsai), Proceedings of the 27th International Conference on Genome Informatics, Oct. 3-5, 2016.
22. " A Comparison Study of Reverse Engineering Gene Regulatory Network Modeling" (Charles C.N. Wang, Pei-Chun Chang, Phillip C.Y. Sheu and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering , Oct. 31-Nov. 02, 2016.
23. " Application of Latent Semantic analysis to clustering of Cardiovascular Gene Ontology" (Charles C.N. Wang, Yu-Liang Lee, Phillip C.Y. Sheu and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
24. " Stent Design for Compensating Wall Shear Stress via Computational Modeling and Fluid Dynamics" (Chun-Ming Chang, Wei Shin Wong and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
25. " Genome-wide Functional Identification of Maximal Consensus Patterns Derived from Multiple Species piRNAs" (Wen-Ling Chan, Jing-Doo Wang, Jan-Gowth Chang, and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
26. " piRNAtarget: the integrated database for mining functionality of piRNA and its targets" (Bing-Rong Jiang, Wan-Ye Wu, Wen-Ling Chan, and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
27. " Fine Classification of Human Gut Microbiota by Using Hierarchical Clustering Approach" (Tzu-Fan Chen, Rong-Ming Chen, Jeffrey J. P. Tsai, and Rouh-Mei Hu), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
28. " Deep learning for risk analysis of specific cardiovascular diseases using environmental data and outpatient records" (Han C.W. Hsiao, Sean H.F. Chen, and Jeffrey J.P. Tsai), Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31-Nov. 02, 2016.
29. " Trust-based IoT Participatory Sensing for Hazard Detection and Response" (Jia Guo, Ing-Ray Chen, Jeffrey J.P. Tsai, and Hamid Al-Hamadi), Proceedings of the IEEE 1st International Workshop for IoT Systems Provisioning and Management in Cloud Computing, Oct. 10-13, 2016.
30. " Trust-based Cooperative Spectrum Sensing against SSDF attacks in Distributed Cognitive Radio Networks,” (J. Wang, I.R. Chen, J.J.P. Tsai, and D.C. Wang), Proceedings of the IEEE Communications Quality and Reliability International Workshop , Stevenson, Washington, May 2016. (Best Paper Award.)
31. " A Mobile Cloud Hierarchical Trust Management Protocol for IoT Systems,” (J. Guo, I.R. Chen, and J.J.P. Tsai), Proceedings of the 5th IEEE International Conference on Mobile Cloud Computing, Services, and Engineering, San Francisco , April 2017.
32. " A Comparative Analysis of Trust-based Service Composition Algorithms in Service-Oriented Ad Hoc Networks,” (Y. Wang, I.R. Chen, J.H. Cho, and J.J.P. Tsai), Proceedings of the International Conference on Information System & Data Mining , U.S., April 2017.
33. " A Case Study of IoT Participatory Sensing of Hazardous Ozone using Traces,” (Y. Wang, I.R. Chen, J.H. Cho, and J.J.P. Tsai), Proceedings of the 7th International Conference on Electronics, Communications and Networks, Taiwan, June 2017.
34. " On the Design of a Blockchain Platform for Clinical Trial and Precision Medicine,” (Zonyin Shae and Jeffrey J.P. Tsai), Proceedings of the 37th IEEE International Conference on Distributed Computing Systems, USA, June. 2017.
35. " Extracting the Co-occurrences of DNA Maximal Repeats in both Human and Viruses,” (Jing-Doo Wang, Yi-Chun Wang, Rouh-Mei Hu and Jeffrey J. P. Tsai), Proceedings of the 17th IEEE International Conference on BioInformatics and BioEngineering, U.S., Oct. 2017.
36. " Potential Applications using the Class Frequency Distribution of Maximal Repeats from Tagged Sequential Data,” (Jing-Doo Wang, Jeffrey J.P. Tsai, and Charles C.N. Wang), Proceedings of the 3rd International Conference on Fuzzy Systems and Data Mining, Taiwan , Nov. 2017.
37. " A Hybrid Blockchain Design for Patient Recruitments and Persistent Monitoring for Clinical Trials ” (Yan Zhuang, Andrea Atkins, Chi-Ren Shyu, Zonyin Shae, Jeffrey J.P. Tsai, Chung Hsu), Proceedings of the IEEE Standards Association , Orlando Florida, Fed. 2018.
38. " Application of Semantic Computing in Cancer on Secondary Data Analysis.” (Charles C. N. Wang, I-Seng Chang, Phillip C.-Y. Sheu and Jeffrey J. P. Tsai), Proceedings of the 5th International Conference on Algorithms for Computational Biology, HK, June. 2018.
39. " Utilize Imputation Method and Meta-analysis to Identify DNA-Methylation-Mediated microRNAs in Ovarian Cancer.” (Ezra B. Wijaya, Erwandy Lim, David Agustriawan, Chien-Hung Huang and Jeffrey J. P. Tsai, Ka-Lok Ng), Proceedings of the Second IEEE International Conference on Robotic Computing, USA, Jan. 2018.
40. " Transform Blockchain into Distributed Parallel Computing Architecture for Precision Medicine.” (Zonyin Shae and Jeffrey J. P. Tsai), Proceedings of the 38th IEEE International Conference on Distributed Computing Systems, Vienna, July, 2018.
41. " Trust as a Service for IoT Service Management in Smart Cities ” (Ing-Ray Chen, Jia Guo, Ding-Chao Wang, Jeffrey Tsai, Hamid Al-Hamadi, Ilsun You), Proceedings of the Second IEEE International Conference on Smart City, UK, June 2018.
42. " Stratification of Human Gut Microbiome and Building a SVM-Based Classifier ” (His-Chung Kung, Jeffrey J. P. Tsai, Rong-Ming Chen and Rouh-Mei Hu), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
43. " Identification of Several Core Overexpressed MicroRNAs that Could Predict Survival in Patients with Ovarian Cancer ” (Eskezeia Y. Dessie, Ezra B. Wijaya, Chien-Hung Huang, David Agustriawan, Jeffrey J.P Tsai and Ka-Lock Ng), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
44. " Quantitative Analysis of ECI2 Expression from RNA-seq for Breast Cancer Gene Signatures ” (Ming-Yi Yen, Hsueh-Ting Chu, Yu-Ching Chen and Jeffrey J P Tsai), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
45. " Identification of Potential Long Non-coding RNA Biomarkers for Breast Cancer Patients with Somatic BRCA1 Mutations from RNA-Seq Datasets ” (Jia-Hua Cai, Yu-Ching Chen, Hsueh-Ting Chu and Jeffrey J P Tsai), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
46. " The Potential Dual-target Inhibitors for HER2/HSP90 Proteins from Traditional Chinese Medicine ” (Jhih-Ying Chen, Chia-Min Chen, Pei-Chun Chang and Jeffrey J.P. Tsai), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
47. " Computational Modeling of the Early Development of Embryonic Leaves in Maize ” (Charles C.N. Wang, Pei-Chun Chang, Phillip C.Y. Sheu and Jeffrey J.P. Tsai), Proceedings of the 18th IEEE International Conference on BioInformatics and BioEngineering, Taiwan, Oct. 2018.
48. " Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials ” (Yan Zhuang, Lincoln Sheets, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu), Proceedings of the AMIA 2018 Annual Symposium , San francisco, Nov. 2018.
49. " AI Blockchain Platform for Trusting News ” (Zonying Shae and Jeffrey J. P. Tsai), Proceedings of the 2019 IEEE International Conference on Distributed Computing Systems , Dallas, Texas. Jul. 2019.
50. " Machine Learning Classification Algorithms on Treadmill Exercise Data for Predicting Significant Coronary Artery Disease ” (James K. S. Wong, You-Zh Lin, Jeffrey J.P. Tsai and Charles C.N. Wang), The First International Symposium on Future ICT (Future ICT 2019) , Taiwan, Oct. 2019.
51. " Random Sampling Deep Learning Mechanism for Discovering Unique Property of No Specific Local Feature Images ” (Zon-Yin Shae, Zhi-Ren Tsai,Chi-Yu Chang and Jeffrey J.P. Tsai), Proceedings of the First IEEE International Conference on Cognitive Machine Intelligence, pp. 226-234, Taiwan, Dec. 2019.
52. “ Development of A Blockchain Framework for Virtual Clinical Trials ” (Yan Zhuang, Lincoln Sheets, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu), Proceedings of the AMIA 2020 Annual Symposium ,San francisco , Nov. 2020.
53. “ Deep Learning Mechanism for Pervasive Internet Addiction Prediction.”(Zon-Yin Sha and Jeffrey J. P. Tsai), Proceedings of the Second IEEE International Conference on Cognitive Machine Intelligence(CogMI), Atlanta, Dec. 2020
54. “ A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients.” (Eskezeia Y Dessie, Jeffrey J. P. Tsai, Jan-Gowth Chang, Ka-Lok Ng), Proceedings of the 19th Asia Pacific Bioinformatics Conference(APBC), National Cheng Kung University, Tainan, Taiwan, Feb. 2021.
55. “ On the Design of Medical Data Ecosystem for Improving Healthcare Research and Commercial Incentive” (Zon-Yin Sha and Jeffrey J. P. Tsai), Proceedings of the Third IEEE International Conference on Cognitive Machine Intelligence (IEEE CogMI)), Virtual Conference, Dec. 2021.

■ Book Chapters

1. “ A Systematic Gene Expression Explorer Tool for Multiple and Paired Chips,” (J. W. Ou, R. M. Chen, R. M. Hu, C. Y. Hsu, and Jeffrey J. P. Tsai), Biomedical Engineering: Health Care Systems, Technology and Techniques, Springer, New York, 2011.
2. “ IHCREAD: An Automatic Immunohistochemistry Image Analysis Tool,” (C. Y. Hsu, R. M. Hu, R. M. Chen, J. W. Ou, and Jeffrey J. P. Tsai), Biomedical Engineering: Health Care Systems, Technology and Techniques, Springer, New York, 2011.
3. “ Sharing Cancer-related Genes Research Resources on Peer-to-Peer Network,” (C. C. Wu, R. M. Chen, and Jeffrey J. P. Tsai), Biomedical Engineering: Health Care Systems, Technology and Techniques, Springer, New York, 2011.
4. “ Sharing Use of semantics in Bio-Informatics,” (Charles C. N. Wang, and Jeffrey J. P. Tsai), Encyclopedia with Semantic Computing and Robotic Intelligence, World Scientific Inc., New York, 2017.
5. “ Sharing Semanic Analytics of Biomedical Data,” (Charles C. N. Wang, Phillip C.-Y. Sheu and Jeffrey J. P. Tsai), Computational Methods with Applications in Bioinformatics Analysis, World Scientific Inc., New York, 2017.
6. “ Sharing Semanic Use of semantics in Bio-Informatics,” (Charles C. N. Wang, and Jeffrey J. P. Tsai), Semantic Computing, World Scientific Inc., New York, 2018.
7. “ Sharing Semanic Use of semantics in Medical Informatics,” (Charles C. N. Wang, and Jeffrey J. P. Tsai), Encyclopedia with Semantic Computing and Robotic Intelligence, World Scientific Inc., New York, 2018.
8. “ Sharing Semanic A Semantic Computing for Cancer Recommendation in Human Robot Interaction,” (Charles C. N. Wang, I-Seng Cheng, Phillip C.-Y. Sheu and Jeffrey J. P. Tsai), Encyclopedia with Semantic Computing and Robotic Intelligence, World Scientific Inc., New York, 2018.

< back >